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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67524950_67529990_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67524950 - 67529990
Intron Length:
5041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CTTCTGTTGATT
Flanking Amino Acid:
YLVARVGSLDRLQPLCPIDG
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
76.1
0.59
1
69
40.7
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
49.5
0.04
2.1
71.41
40.3

Associated Gene:

Gene:
HS3ST5
Ensembl Gene ID:
ENSAPLG00000006908
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027757
67405095 - 67530921
125827
ENSAPLT00000007159
67478430 - 67530921
52492