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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6754644_6755411_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6754644 - 6755411
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
GGTGTTTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTTTTTAAAT
Flanking Amino Acid:
QINRTTEISEVPQKSLGHEV
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67
0.38
1
62.2
43.3
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
68.8
0.67
1.3
78.79
37.6

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099
ENSAPLT00000004570
6711854 - 6787795
75942
ENSAPLT00000047511
6711854 - 6787795
75942