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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6755597_6757797_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6755597 - 6757797
Intron Length:
2201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCACC
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAACT
Flanking Amino Acid:
EKENQRLNKKLEGLENEISQ
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
62.8
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.6
0.78
0.7
77.9
31
Minor 5ss
39.6
-1.2
3
53.5
43.4
Minor BPS
50.9
0.11
2.2
81.75
39.5

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004570
6711854 - 6787795
75942
ENSAPLT00000047511
6711854 - 6787795
75942
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099