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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6757936_6760269_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6757936 - 6760269

Intron Length:

2334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCAAAATTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

TTTTCCCCAAAA

Flanking Amino Acid:

EALRENSERQIKLLEQENEH

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.77

0.9

80.3

26.9

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

54.5

0.1

0.9

53.2

34.5

Minor 5ss

32.3

-2

2.7

33.9

Minor BPS

58.9

0.28

78.36

37.5

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004570

6711854 - 6787795

75942

ENSAPLT00000047511

6711854 - 6787795

75942

ENSAPLT00000038946

6711854 - 6787795

75942

ENSAPLT00000028128

6711854 - 6776952

65099