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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67588028_67588453_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67588028 - 67588453
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GTTCTGTTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTAAAATAACT
Flanking Amino Acid:
YGLYRKMEIYRPHKATAEEM
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.5
0.57
1
73.9
40.4
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
48.7
-0
2.1
75.25
40.2

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280