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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67588572_67589520_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67588572 - 67589520
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTCTTAAACA
Flanking Amino Acid:
MSEYSKQMQRFNVGEDCPVF
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.3
0.55
1
70.8
38.4
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
72.3
0.7
1.6
81.43
34

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280