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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67589596_67589911_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67589596 - 67589911
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTCCTTTCAATT
Flanking Amino Acid:
FCQLSTGGSVAGAVKLNRQQ
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
88.7
0.87
0.7
83.5
31.6
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
57
0.3
1.5
72.72
39

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280