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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67596879_67598303_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67596879 - 67598303
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTTTGCATACAT
Flanking Amino Acid:
RLGCFNLTVKGHAKCVEVVK
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
78.1
0.63
1
75.5
38.4
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
48
-0
2.3
78.17
43.8

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280