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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67598445_67600190_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67598445 - 67600190
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTGGTTTATA
Flanking Amino Acid:
AVALDCEIPNELPYNDYFEY
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82
0.72
0.9
76.5
37.7
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
47
-0.2
2.6
70.72
41.9

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280