About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67600300_67602121_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67600300 - 67602121
Intron Length:
1822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTCCCTTACTT
Flanking Amino Acid:
QNTPEYMEKIKQRLFENLRM
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.3
0.64
0.8
69.1
36
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
67.7
0.63
1.6
82.31
39.1

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280