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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67602253_67603040_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67602253 - 67603040
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGAAAT
5'SS Class:
major
3'SS Sequence:
TCTTGAATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GTTTGATTAACT
Flanking Amino Acid:
DGEDPDKRISIRASDKRIAC
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
76.2
32.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
68.1
0.41
0.9
59.4
40.7
Minor 5ss
37
-1.5
3.1
51.2
40.4
Minor BPS
65
0.55
2
86.23
39.4

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280