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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67603197_67603915_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67603197 - 67603915
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATGTTTCAACT
Flanking Amino Acid:
DKKETEDKKADVKEEDKSKD
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.2
0.9
0.6
89.7
25.5
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
59.8
0.39
1.6
76.67
40.2

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280