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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67603974_67604163_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67603974 - 67604163
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAACTCT
5'SS Class:
major
3'SS Sequence:
TGCTTTTATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATTGCACAACT
Flanking Amino Acid:
DNSGEKTDTKGAKSEQLSNP
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
65.7
41
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.1
0.7
0.9
77
36.3
Minor 5ss
45.4
-0.5
3
57.1
47.1
Minor BPS
48.5
-0
2.2
73.38
42.8

Associated Gene:

Gene:
HDAC2
Ensembl Gene ID:
ENSAPLG00000006926
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007252
67587915 - 67604194
16280