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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6761341_6761841_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6761341 - 6761841

Intron Length:

501

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTGTGCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAC

U12 Branch Point Sequence:

TGTATAATAACA

Flanking Amino Acid:

DKKTLVTLREDLVSEKLKTQ

Intron Amino Acid Position:

885

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.4

34.2

Major BPS

77.9

0.69

78.3

31.3

Major PPT

66.8

0.38

1.2

67.7

42.7

Minor 5ss

34.4

-1.8

2.8

42.8

Minor BPS

49.5

-0

1.9

67.24

38.2

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047511

6711854 - 6787795

75942

ENSAPLT00000038946

6711854 - 6787795

75942

ENSAPLT00000028128

6711854 - 6776952

65099

ENSAPLT00000004570

6711854 - 6787795

75942