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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67651304_67655395_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
67651304 - 67655395
Intron Length:
4092

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCCCAAACA
5'SS Class:
weak_major
3'SS Sequence:
CGCTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
CCCCCGGTAACG
Flanking Amino Acid:
FFADTALAGKENGHVKVNGD
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.01
1.2
52.2
38
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
75.6
0.58
0.9
68.6
37.3
Minor 5ss
18.8
-3.6
3.6
23.7
29.3
Minor BPS
40.2
-0.8
2.5
43.71
48

Associated Gene:

Gene:
MARCKS
Ensembl Gene ID:
ENSAPLG00000030242
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034899
67650533 - 67655545
5013