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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6765520_6766217_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6765520 - 6766217
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TAAATAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTCTAAATA
Flanking Amino Acid:
NQQLRQELKTVKKNYEALKQ
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.48
1.1
63.7
42.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.8
0.33
1
60.7
44.3
Minor 5ss
33.8
-1.8
3.2
45.2
43.7
Minor BPS
65.5
0.48
1.6
74.21
38.4

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004570
6711854 - 6787795
75942
ENSAPLT00000047511
6711854 - 6787795
75942
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099