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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6767150_6769397_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6767150 - 6769397
Intron Length:
2248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTTGTCAAAT
Flanking Amino Acid:
TLQTQNAKLQVENSTLNSQS
Intron Amino Acid Position:
1088

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
48
-0
2.3
72.8
44.1

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047511
6711854 - 6787795
75942
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099
ENSAPLT00000004570
6711854 - 6787795
75942