About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6769676_6769896_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6769676 - 6769896
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
GTAAATACAATT
Flanking Amino Acid:
LEVEHKDLEDRYNQLLKQKV
Intron Amino Acid Position:
1180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
41.8
-0.5
1.8
57.06
39

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099
ENSAPLT00000004570
6711854 - 6787795
75942
ENSAPLT00000047511
6711854 - 6787795
75942