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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6771771_6772406_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6771771 - 6772406
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTAATT
Flanking Amino Acid:
DLFHVEQRQYIDKLNELRRQ
Intron Amino Acid Position:
1339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
86
24.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
88.9
0.88
0.7
83.5
31.6
Minor 5ss
43.1
-0.8
3.1
62.8
42
Minor BPS
76.8
0.92
1.5
90.41
32.9

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099
ENSAPLT00000004570
6711854 - 6787795
75942
ENSAPLT00000047511
6711854 - 6787795
75942