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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6772500_6772694_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6772500 - 6772694
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGATG
5'SS Class:
major
3'SS Sequence:
TTATTGATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTATTGATAACA
Flanking Amino Acid:
YKFYEPSPPRRRGNWIALKM
Intron Amino Acid Position:
1370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.2
44.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
71.8
0.49
1
67
42.5
Minor 5ss
34.6
-1.8
3.5
47.9
47.8
Minor BPS
51.8
0.05
2.3
72.79
38.9

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047511
6711854 - 6787795
75942
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000004570
6711854 - 6787795
75942