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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6772910_6776864_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6772910 - 6776864

Intron Length:

3955

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTA|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

TATGACATAAAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

TTTTCCTCATGC

Flanking Amino Acid:

GQTLGTKKSSMVALKRLPFL

Intron Amino Acid Position:

1442

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

72.2

32.1

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

51.7

0.04

1.2

50.8

41.4

Minor 5ss

32.4

-2

2.6

36.4

34.8

Minor BPS

55.7

0.16

2.1

74.6

42.2

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038946

6711854 - 6787795

75942

ENSAPLT00000004570

6711854 - 6787795

75942