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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6778176_6778493_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6778176 - 6778493
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGGTA
5'SS Class:
major
3'SS Sequence:
CTTCTGTGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTCACA
Flanking Amino Acid:
FRSKQLLNNKDTTSFEDVSP
Intron Amino Acid Position:
1538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68.2
36.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.9
0.52
0.9
68.1
37.6
Minor 5ss
38.2
-1.3
3.7
54.8
49.4
Minor BPS
58.6
0.27
1.9
74.53
37

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047511
6711854 - 6787795
75942
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000004570
6711854 - 6787795
75942