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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6778566_6779540_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6778566 - 6779540

Intron Length:

975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCCATTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

TGTCTCCTAATT

Flanking Amino Acid:

DDSSTGSRVHASRPASLDSG

Intron Amino Acid Position:

1562

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

74.2

Major BPS

84.8

0.86

85.7

34.9

Major PPT

77.1

0.61

0.9

75.6

33.9

Minor 5ss

39.8

-1.1

3.1

53.4

45.6

Minor BPS

61.1

0.43

1.7

78.82

37.1

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004570

6711854 - 6787795

75942

ENSAPLT00000038946

6711854 - 6787795

75942