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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6778566_6781070_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6778566 - 6781070

Intron Length:

2505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

TTTACTCCAAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

GGATATTTAATA

Flanking Amino Acid:

DDSSTGSRVHAGVVNNQSRP

Intron Amino Acid Position:

1347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

74.2

Major BPS

90.7

1.01

0.7

19.9

Major PPT

63.9

0.31

1.1

65.3

35.2

Minor 5ss

39.8

-1.1

3.1

53.4

45.6

Minor BPS

58.5

0.26

1.5

62.92

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047511

6711854 - 6787795

75942