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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67787796_67790697_R

Intron Information:

Intron Rank:
134694
Intron Class:
major
Intron Phase:
Intron Coordinates:
67787796 - 67790697
Intron Length:
2902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCCGTGTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
ATTTTCAGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
79.1
0.66
0.9
75.9
38
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
51.2
0.03
1.8
69.11
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037578
67787790 - 67794132
6343