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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6779622_6781070_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6779622 - 6781070

Intron Length:

1449

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTACTCCAAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

GGATATTTAATA

Flanking Amino Acid:

NNNASLHEVKAGVVNNQSRP

Intron Amino Acid Position:

1589

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

71.4

41.2

Major BPS

90.7

1.01

0.7

19.9

Major PPT

63.9

0.31

1.1

65.3

35.2

Minor 5ss

55.9

0.2

2.5

73.6

Minor BPS

58.5

0.26

1.5

62.92

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038946

6711854 - 6787795

75942

ENSAPLT00000004570

6711854 - 6787795

75942