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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6781337_6783021_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6781337 - 6783021
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTATTTTTGACA
Flanking Amino Acid:
EESNKSTSSEMKSASEENLL
Intron Amino Acid Position:
1678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.5
0.64
1
75.7
38
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
66.3
0.51
1.2
69.89
36.6

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047511
6711854 - 6787795
75942
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000004570
6711854 - 6787795
75942