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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6783105_6783341_F

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6783105 - 6783341
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCTAAGAAA
5'SS Class:
weak_major
3'SS Sequence:
AGCGACAATCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAAAGAA
U12 Branch Point Sequence:
ATGCAAGCAACT
Flanking Amino Acid:
SESAELTGKEKDCNPYATLP
Intron Amino Acid Position:
1705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
1.3
55.5
42
Major BPS
50.4
0.01
1.1
47.3
36.1
Major PPT
46.7
-0.1
1.1
35.6
38.8
Minor 5ss
18.7
-3.6
3.6
23
30
Minor BPS
38.7
-0.7
2.3
58.78
43.5

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038946
6711854 - 6787795
75942