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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6783512_6787730_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6783512 - 6787730
Intron Length:
4219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
ATAATATGAAAT
Flanking Amino Acid:
TADRSVPATSNVEAIPESRN
Intron Amino Acid Position:
1841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
76
32.7
Major BPS
66.7
0.41
1
57.8
39
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
34.8
-1.7
2.8
45.5
37.1
Minor BPS
46.1
-0.2
1.8
63.87
39.2

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047511
6711854 - 6787795
75942
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000004570
6711854 - 6787795
75942