About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67855504_67857152_R

Intron Information:

Intron Rank:
154559
Intron Class:
major
Intron Phase:
Intron Coordinates:
67855504 - 67857152
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCCTCTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
80
0.75
1
78.6
31
Major PPT
79.4
0.66
1
73.2
41.7
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
65.6
0.57
1.8
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023767
67846914 - 67857504
10591