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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67883722_67887203_F

Intron Information:

Intron Rank:
125402
Intron Class:
major
Intron Phase:
Intron Coordinates:
67883722 - 67887203
Intron Length:
3482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTAAAGT
5'SS Class:
major
3'SS Sequence:
TTTTATCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.2
62.6
41.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.7
81.2
30.6
Minor 5ss
37
-1.5
2.9
50.2
45.7
Minor BPS
59.3
0.37
1.7
77.45
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030148
67883154 - 67887474
4321