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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67889555_67896901_F

Intron Information:

Intron Rank:
134107
Intron Class:
major
Intron Phase:
Intron Coordinates:
67889555 - 67896901
Intron Length:
7347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80
0.67
0.8
78.1
29
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
49.4
0.03
1.8
68.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022077
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047578
67889531 - 67961488
71958