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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67935044_67936803_F

Intron Information:

Intron Rank:
134106
Intron Class:
major
Intron Phase:
Intron Coordinates:
67935044 - 67936803
Intron Length:
1760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTTTTTCTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
64.7
0.37
1
73
31.5
Major PPT
76.8
0.6
0.8
69
36.5
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
58.5
0.35
1.9
83.74
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022077
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023929
67934046 - 67936889
2844