Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6808247_6808766_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6808247 - 6808766

Intron Length:

520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

ACTTCACAAATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

ATTTTCTTACTT

Flanking Amino Acid:

RTLSDYNIQKESTLHLVLRL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

40.1

Major BPS

77.3

0.68

81.5

Major PPT

58.1

0.18

52.9

35.4

Minor 5ss

28.4

-2.5

3.1

31.4

36.6

Minor BPS

70.9

0.74

1.5

85.57

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005606

6807655 - 6809202

1548