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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6808853_6808940_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6808853 - 6808940
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCGCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CGTGCCTCACGT
Flanking Amino Acid:
NVKAKIQDKEGIPPDQQRLI
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
66.8
0.38
1
62.4
39.8
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
43.8
-0.3
2.2
60.32
48.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005406
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005606
6807655 - 6809202
1548