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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6810145_6810890_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6810145 - 6810890
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAT
5'SS Class:
major
3'SS Sequence:
AATACATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CTTCCCACAAAT
Flanking Amino Acid:
YIIYSNAFDKIIEYVSAYKN
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
77.7
33.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
66.7
0.38
1
58.3
41.2
Minor 5ss
45.2
-0.5
3
64.8
46.5
Minor BPS
49.1
0.01
2
72.58
43.4

Associated Gene:

Gene:
CLHC1
Ensembl Gene ID:
ENSAPLG00000005586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005773
6808075 - 6819510
11436