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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6810161_6810269_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6810161 - 6810269
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTGCTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAATTTTGAACT
Flanking Amino Acid:
NAFDKVTYFSDQRLIIEYVS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.7
0.49
1
65.6
39.9
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
59.3
0.37
1.4
70.34
40.5

Associated Gene:

Gene:
CLHC1
Ensembl Gene ID:
ENSAPLG00000005586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026015
6809983 - 6819510
9528