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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6811079_6811507_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6811079 - 6811507
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATT
Flanking Amino Acid:
YRKRAMELEDKIKAIEKNSA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.2
35.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
48.2
-0.2
2.8
66.3
38.7
Minor BPS
53.5
0.19
2.4
82.74
39.5

Associated Gene:

Gene:
CLHC1
Ensembl Gene ID:
ENSAPLG00000005586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026015
6809983 - 6819510
9528
ENSAPLT00000005773
6808075 - 6819510
11436