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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6811639_6812917_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6811639 - 6812917
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
AGCTCATGAAAG
Flanking Amino Acid:
KTVHPAKPIPGLSVEESLSL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
79
0.65
0.8
73
32
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
46.4
-0.4
1.9
50.55
42.6

Associated Gene:

Gene:
CLHC1
Ensembl Gene ID:
ENSAPLG00000005586
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005773
6808075 - 6819510
11436