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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6813120_6814699_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6813120 - 6814699

Intron Length:

1580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTCACAAA

5'SS Class:

weak_major

3'SS Sequence:

TGTATTCTTAAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

GTATTCTTAAAG

Flanking Amino Acid:

AEAKRDKLKLSLGFLTGFLF

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

59.6

0.23

1.2

59.7

40.7

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

71.6

0.49

1.1

71.3

38.7

Minor 5ss

33.3

-1.9

40.4

45.4

Minor BPS

66.2

0.37

1.5

66.3

40.9

Associated Gene:

Gene:

CLHC1

Ensembl Gene ID:

ENSAPLG00000005586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026015

6809983 - 6819510

9528

ENSAPLT00000005773

6808075 - 6819510

11436