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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6814915_6816228_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6814915 - 6816228

Intron Length:

1314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGAACT

5'SS Class:

strong_major

3'SS Sequence:

TTCAACCCTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTGTTTTCAACC

Flanking Amino Acid:

CNEEALKNLKSLSCLEGRNL

Intron Amino Acid Position:

301

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

80.2

32.3

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

70.7

0.47

0.8

Minor 5ss

38.5

-1.3

3.1

55.7

41.2

Minor BPS

65.5

0.47

1.5

73.78

37.5

Associated Gene:

Gene:

CLHC1

Ensembl Gene ID:

ENSAPLG00000005586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005773

6808075 - 6819510

11436

ENSAPLT00000026015

6809983 - 6819510

9528