Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6817342_6818106_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6817342 - 6818106

Intron Length:

765

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAATAAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TTTATAATAATC

Flanking Amino Acid:

YIQQVEHFSLDDYFFLLENC

Intron Amino Acid Position:

427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

89.4

23.3

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

87.9

0.85

0.8

85.4

34.1

Minor 5ss

36.8

-1.5

2.9

50.6

45.9

Minor BPS

50.2

-0

1.9

69.08

Associated Gene:

Gene:

CLHC1

Ensembl Gene ID:

ENSAPLG00000005586

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026015

6809983 - 6819510

9528

ENSAPLT00000005773

6808075 - 6819510

11436