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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68479048_68479686_R

Intron Information:

Intron Rank:
134737
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
68479048 - 68479686
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CTTATGGAAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.8
33.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
49.4
-0
1.2
49.2
42.2
Minor 5ss
26.4
-2.7
3.2
31
36.4
Minor BPS
52.6
-0
2
62.15
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019818
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040601
68466333 - 68479822
13490