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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68618130_68629626_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68618130 - 68629626
Intron Length:
11497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCACTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTCTTTTCACT
Flanking Amino Acid:
RCLDGSGICVGCQRNTTGEH
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.3
0.5
1
73
30.7
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
58.4
0.34
1.7
76.22
41

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851