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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68629752_68633411_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68629752 - 68633411
Intron Length:
3660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
AATGAAATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTACTCTAATG
Flanking Amino Acid:
PCPCPLPGTANFADSCYRKN
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.4
37.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
61.8
0.27
1.1
49.2
47.1
Minor 5ss
42.9
-0.8
2.5
50.7
40.2
Minor BPS
59.4
0.16
1.8
68.73
39

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851