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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68633493_68638187_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68633493 - 68638187
Intron Length:
4695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
GTCATTGCAAGT
Flanking Amino Acid:
KENYAGPNCERCAPGYYGNP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
90.8
0.92
0.6
88.8
20.5
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
37.9
-0.8
2.2
52.43
42.9

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851