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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68640862_68642187_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68640862 - 68642187
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTTCTTATCA
Flanking Amino Acid:
VSTGTDCPTISCDKCIWDLT
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
76.3
32.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83
0.74
0.9
82.7
33
Minor 5ss
38.9
-1.2
3.1
51.2
40.4
Minor BPS
72.7
0.71
1.5
81.35
33.9

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851