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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68649275_68651421_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
68649275 - 68651421
Intron Length:
2147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTATGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
AGTTCACAAACA
Flanking Amino Acid:
ENTANLQEHEKQHEKIKEQV
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
61.4
38.3
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
44.4
-0.6
2.8
60
44.5
Minor BPS
47
-0.2
2.2
64.95
40.7

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851