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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68653719_68655870_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
68653719 - 68655870
Intron Length:
2152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAAATTT
5'SS Class:
major
3'SS Sequence:
GTCTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
GTCTCTTTAACA
Flanking Amino Acid:
NLRGLADELDRNLHGVDTNG
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.2
35.4
Major BPS
74.2
0.6
1
67
39.4
Major PPT
77
0.61
0.9
72.8
36.2
Minor 5ss
43.7
-0.7
3.3
65.6
45.5
Minor BPS
79.3
0.92
1.1
79.83
36.4

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851