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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_68658515_68661868_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68658515 - 68661868
Intron Length:
3354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
TTTCTAACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTTTTCTAACT
Flanking Amino Acid:
KSAVHSAGDAVRKLEEVFPQ
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.1
0.7
0.8
75.3
33.3
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
67
0.61
1.6
83.74
37.5

Associated Gene:

Gene:
LAMA4
Ensembl Gene ID:
ENSAPLG00000013937
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014625
68615641 - 68691491
75851